Variant report

Variant	rs1341226
Chromosome Location	chr6:82268313-82268314
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1145887	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1145889	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12195387	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12208792	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1276882	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1276883	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1417716	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1917065	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2027435	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753422	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4285367	0.81[AMR][1000 genomes]
rs4448140	0.81[AMR][1000 genomes]
rs4591906	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4706897	0.83[AMR][1000 genomes]
rs4706898	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6906526	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910041	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6912820	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752892	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9294233	0.83[AMR][1000 genomes]
rs9344195	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344199	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9344202	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9344203	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9350930	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353014	0.81[ASN][1000 genomes]
rs9353018	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9359497	0.81[ASN][1000 genomes]
rs9361839	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443930	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449340	0.81[ASN][1000 genomes]
rs9449342	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449346	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82261000-82271000	Weak transcription	Aorta	Aorta
2	chr6:82263400-82270800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:82264600-82270800	Weak transcription	Fetal Lung	lung
4	chr6:82266400-82270400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:82266400-82270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:82266400-82270800	Weak transcription	Osteobl	bone
7	chr6:82266600-82270800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:82266600-82270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:82266600-82270800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82267000-82270600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:82267400-82271000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:82267600-82271400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:82268000-82274400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:82268200-82270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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