Variant report

Variant	rs4285367
Chromosome Location	chr6:82247074-82247075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10943817	0.87[EUR][1000 genomes]
rs1145889	0.81[CHB][hapmap]
rs12195387	0.83[AMR][1000 genomes]
rs12208792	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1276882	0.82[CHB][hapmap]
rs1341226	0.81[AMR][1000 genomes]
rs1417716	0.83[AMR][1000 genomes]
rs1917065	0.83[AMR][1000 genomes]
rs2025273	0.83[CEU][hapmap]
rs2027435	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2753422	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4448140	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4591906	0.82[AMR][1000 genomes]
rs4706897	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706898	0.82[AMR][1000 genomes]
rs6906526	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6910041	0.95[CHB][hapmap];0.88[MEX][hapmap]
rs6912820	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9294233	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9344195	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9344199	0.83[AMR][1000 genomes]
rs9344204	0.82[AMR][1000 genomes]
rs9344205	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9350930	0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9353018	0.84[AMR][1000 genomes]
rs9361839	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9443923	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9443930	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9449344	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9449346	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9449350	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82244000-82259000	Weak transcription	Placenta	Placenta
2	chr6:82245400-82253000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:82245400-82253000	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links