Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82316769..82319258-chr6:82322440..82324467,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1145887	0.83[AMR][1000 genomes]
rs1145889	0.86[AMR][1000 genomes]
rs1276882	0.85[AMR][1000 genomes]
rs1276883	0.86[AMR][1000 genomes]
rs1322896	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341219	0.80[EUR][1000 genomes]
rs1341225	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2025273	0.83[CEU][hapmap]
rs2753422	0.84[AMR][1000 genomes]
rs4285367	0.82[AMR][1000 genomes]
rs4448140	0.80[EUR][1000 genomes]
rs4706897	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6910041	0.83[AMR][1000 genomes]
rs9294233	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9344202	0.83[AMR][1000 genomes]
rs9344203	0.82[AMR][1000 genomes]
rs9344205	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9344207	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9344210	0.80[EUR][1000 genomes]
rs9361848	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9449357	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs975605	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82315400-82318000	Enhancers	NHDF-Ad	bronchial
2	chr6:82316400-82318200	Enhancers	HUVEC	blood vessel
3	chr6:82316600-82317600	Enhancers	NHLF	lung
4	chr6:82317000-82317400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:82317000-82317400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:82317000-82317400	Flanking Active TSS	NH-A	brain
7	chr6:82317000-82317400	Flanking Active TSS	Osteobl	bone
8	chr6:82317000-82317600	Enhancers	Hela-S3	cervix
9	chr6:82317000-82317800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82317000-82317800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr6:82317000-82318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:82317200-82317400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:82317200-82317800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: