Variant report

Variant	rs1145887
Chromosome Location	chr6:82340390-82340391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1145880	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1145889	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195387	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12208792	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1276879	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1276880	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1276881	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1276882	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1276883	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322896	0.85[ASN][1000 genomes]
rs1341226	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1417716	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1917065	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2025273	0.83[CHB][hapmap]
rs2027435	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4591906	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4706898	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6906526	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6910041	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6912820	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs912029	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344195	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9344199	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9344202	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9344203	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9344204	0.83[AMR][1000 genomes]
rs9344205	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9350930	0.96[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9353018	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9361839	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9443930	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9449346	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373487	chr6:82337583-82341781	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82318000-82356600	Weak transcription	Aorta	Aorta
2	chr6:82340200-82341400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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