Variant report

Variant	rs4706898
Chromosome Location	chr6:82283489-82283490
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1145880	0.83[AMR][1000 genomes]
rs1145887	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1145889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12195387	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12208792	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1276879	0.83[AMR][1000 genomes]
rs1276881	0.83[AMR][1000 genomes]
rs1276882	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1276883	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1341226	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1417716	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917065	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2027435	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2753422	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4285367	0.82[AMR][1000 genomes]
rs4448140	0.82[AMR][1000 genomes]
rs4591906	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706897	0.84[AMR][1000 genomes]
rs6900044	0.84[CEU][hapmap]
rs6906526	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910041	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912820	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7752892	0.85[AMR][1000 genomes]
rs9294233	0.84[AMR][1000 genomes]
rs9344195	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9344199	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9344202	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9344203	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9350930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9353014	0.81[AMR][1000 genomes]
rs9353018	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9359497	0.81[AMR][1000 genomes]
rs9361839	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9443930	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9449340	0.82[AMR][1000 genomes]
rs9449342	0.83[AMR][1000 genomes]
rs9449346	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82281800-82285000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:82282200-82285200	Weak transcription	Fetal Heart	heart
3	chr6:82282400-82285000	Weak transcription	Fetal Stomach	stomach
4	chr6:82282600-82285000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:82282800-82284600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links