Variant report

Variant	rs9294233
Chromosome Location	chr6:82271163-82271164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10943817	0.85[EUR][1000 genomes]
rs1145889	0.86[CHB][hapmap]
rs12195387	0.85[AMR][1000 genomes]
rs12208792	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1276882	0.86[CHB][hapmap]
rs1341226	0.83[AMR][1000 genomes]
rs1417716	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1917065	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2025273	0.83[CEU][hapmap]
rs2027435	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2753422	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4285367	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4448140	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591906	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4706897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706898	0.84[AMR][1000 genomes]
rs6906526	0.84[AMR][1000 genomes]
rs6910041	1.00[CHB][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs6912820	0.83[AMR][1000 genomes]
rs9344195	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344199	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9344204	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9344205	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9350930	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9353018	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9361839	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9443923	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9443930	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9449344	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9449346	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9449350	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82267600-82271400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:82268000-82274400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:82270600-82271200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:82270600-82271200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:82270600-82271400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr6:82270600-82271600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:82270600-82271600	Enhancers	Colon Smooth Muscle	Colon
8	chr6:82270600-82272000	Enhancers	HSMM	muscle
9	chr6:82270600-82272200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:82270600-82272400	Enhancers	Stomach Mucosa	stomach
11	chr6:82270600-82272400	Enhancers	HepG2	liver
12	chr6:82270600-82272600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:82270600-82272600	Enhancers	Hela-S3	cervix
14	chr6:82270600-82272600	Enhancers	NH-A	brain
15	chr6:82270800-82271400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:82270800-82271600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:82270800-82271600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:82270800-82271800	Enhancers	Small Intestine	intestine
19	chr6:82270800-82271800	Enhancers	Osteobl	bone
20	chr6:82270800-82272000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:82270800-82272000	Enhancers	Fetal Heart	heart
22	chr6:82270800-82272200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:82270800-82272200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:82270800-82272200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:82270800-82272200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:82270800-82272400	Enhancers	NHLF	lung
27	chr6:82270800-82272600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:82270800-82272600	Enhancers	Fetal Intestine Small	intestine
29	chr6:82270800-82272600	Enhancers	Fetal Lung	lung
30	chr6:82270800-82272600	Enhancers	Fetal Stomach	stomach
31	chr6:82270800-82273200	Enhancers	Liver	Liver
32	chr6:82270800-82273200	Enhancers	Fetal Intestine Large	intestine
33	chr6:82270800-82275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:82271000-82271200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:82271000-82271200	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr6:82271000-82271400	Weak transcription	Ovary	ovary
37	chr6:82271000-82271400	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:82271000-82271600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:82271000-82271600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr6:82271000-82271600	Weak transcription	HSMMtube	muscle
41	chr6:82271000-82272000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:82271000-82272200	Active TSS	Aorta	Aorta

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