Variant report

Variant	rs9449350
Chromosome Location	chr6:82281417-82281418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10943824	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341225	0.83[AMR][1000 genomes]
rs2025273	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2753422	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4285367	0.87[AMR][1000 genomes]
rs4448140	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706897	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9294233	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9344207	0.83[AMR][1000 genomes]
rs9353012	0.84[EUR][1000 genomes]
rs9361848	0.83[AMR][1000 genomes]
rs9449344	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9449357	0.82[AMR][1000 genomes]
rs975605	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82280200-82282200	Enhancers	Fetal Heart	heart
2	chr6:82280400-82282800	Enhancers	Colon Smooth Muscle	Colon
3	chr6:82280600-82281600	Enhancers	Right Ventricle	heart
4	chr6:82280800-82281800	Enhancers	Stomach Smooth Muscle	stomach
5	chr6:82281000-82282600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr6:82281200-82281600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:82281200-82282400	Enhancers	Fetal Stomach	stomach
8	chr6:82281400-82281600	Enhancers	Left Ventricle	heart
9	chr6:82281400-82282000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:82281400-82282200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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