Variant report

Variant	rs10943824
Chromosome Location	chr6:82335012-82335013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1145889	0.81[CHB][hapmap]
rs1276882	0.82[CHB][hapmap]
rs1341219	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1341225	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1935000	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1935001	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1935002	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2025273	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344205	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344207	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9344210	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9361848	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9449344	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9449350	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9449357	0.83[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs975605	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10943824	FAM46A	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82318000-82356600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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