Variant report
| Variant | rs1321815 |
|---|---|
| Chromosome Location | chr6:117742078-117742079 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:117736654..117739264-chr6:117740567..117742292,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1321798 | 0.91[EUR][1000 genomes] |
| rs1321799 | 0.91[EUR][1000 genomes] |
| rs1321800 | 0.81[EUR][1000 genomes] |
| rs1321802 | 0.90[EUR][1000 genomes] |
| rs1321803 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1321816 | 0.88[EUR][1000 genomes] |
| rs1407179 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1407185 | 0.91[EUR][1000 genomes] |
| rs1853148 | 0.93[EUR][1000 genomes] |
| rs2180811 | 0.90[EUR][1000 genomes] |
| rs2243378 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2273602 | 0.91[EUR][1000 genomes] |
| rs34882116 | 0.83[EUR][1000 genomes] |
| rs3777981 | 0.88[EUR][1000 genomes] |
| rs3798390 | 0.91[EUR][1000 genomes] |
| rs3798393 | 0.91[EUR][1000 genomes] |
| rs3798394 | 0.91[EUR][1000 genomes] |
| rs4945584 | 0.89[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4946256 | 0.89[EUR][1000 genomes] |
| rs6937083 | 0.90[EUR][1000 genomes] |
| rs765516 | 0.91[EUR][1000 genomes] |
| rs7770923 | 0.91[EUR][1000 genomes] |
| rs7771211 | 0.91[EUR][1000 genomes] |
| rs7771271 | 0.91[EUR][1000 genomes] |
| rs7771637 | 0.91[EUR][1000 genomes] |
| rs7772046 | 0.91[EUR][1000 genomes] |
| rs7776244 | 0.91[EUR][1000 genomes] |
| rs9372480 | 0.93[EUR][1000 genomes] |
| rs9374662 | 0.90[EUR][1000 genomes] |
| rs9374663 | 0.90[EUR][1000 genomes] |
| rs9385012 | 0.91[EUR][1000 genomes] |
| rs9385013 | 0.90[EUR][1000 genomes] |
| rs9387478 | 0.90[EUR][1000 genomes] |
| rs9401006 | 0.91[EUR][1000 genomes] |
| rs9401007 | 0.91[EUR][1000 genomes] |
| rs9489150 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532050 | chr6:117528154-118203005 | ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1321815 | DCBLD1 | cis | Thyroid | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:117736600-117744400 | Weak transcription | HSMM | muscle |
| 2 | chr6:117739400-117745000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
