Variant report

Variant	rs9372480
Chromosome Location	chr6:117760579-117760580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1321798	0.88[EUR][1000 genomes]
rs1321799	0.88[EUR][1000 genomes]
rs1321802	0.87[EUR][1000 genomes]
rs1321803	0.86[EUR][1000 genomes]
rs1321815	0.93[EUR][1000 genomes]
rs1321816	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1407179	0.80[EUR][1000 genomes]
rs1407184	0.89[JPT][hapmap]
rs1407185	0.89[EUR][1000 genomes]
rs1853148	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2180811	0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2243	0.89[JPT][hapmap]
rs2243378	0.85[EUR][1000 genomes]
rs2273602	0.88[EUR][1000 genomes]
rs34882116	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3777981	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3798390	0.88[EUR][1000 genomes]
rs3798393	0.88[EUR][1000 genomes]
rs3798394	0.88[EUR][1000 genomes]
rs4945584	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946254	0.80[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4946256	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6937083	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6941337	0.80[ASN][1000 genomes]
rs765516	0.88[EUR][1000 genomes]
rs7770923	0.88[EUR][1000 genomes]
rs7771211	0.88[EUR][1000 genomes]
rs7771271	0.88[EUR][1000 genomes]
rs7771637	0.88[EUR][1000 genomes]
rs7772046	0.88[EUR][1000 genomes]
rs7776244	0.88[EUR][1000 genomes]
rs9374658	0.89[JPT][hapmap]
rs9374662	0.89[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374663	0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9385012	0.88[EUR][1000 genomes]
rs9385013	0.87[EUR][1000 genomes]
rs9387478	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401006	0.88[EUR][1000 genomes]
rs9401007	0.89[EUR][1000 genomes]
rs9489150	0.84[EUR][1000 genomes]
rs9489152	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv966655	chr6:117758375-117766294	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9372480	DCBLD1	cis	Adipose Subcutaneous	GTEx
rs9372480	DCBLD1	cis	Thyroid	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117747600-117760600	Weak transcription	Osteobl	bone
2	chr6:117760000-117761200	ZNF genes & repeats	HSMM	muscle
3	chr6:117760000-117762000	Enhancers	Hela-S3	cervix
4	chr6:117760000-117762600	Enhancers	HMEC	breast
5	chr6:117760200-117761000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:117760400-117760800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:117760400-117761400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--

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