Variant report

Variant	rs1321818
Chromosome Location	chr6:24404405-24404406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24402909..24405943-chr6:24492830..24496087,3	K562	blood:
2	chr6:24401784..24404907-chr6:24494976..24497958,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112294	Chromatin interaction
ENSG00000112293	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10946695	0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10946696	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2760182	1.00[CHD][hapmap]
rs6899605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7449704	1.00[EUR][1000 genomes]
rs9467138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24401800-24405400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:24402400-24406600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:24402600-24404600	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr6:24402600-24404600	Active TSS	Rectal Smooth Muscle	rectum
5	chr6:24402600-24404600	Active TSS	Stomach Smooth Muscle	stomach
6	chr6:24402600-24404800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:24402600-24405000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:24402600-24405200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:24402600-24405400	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:24402600-24405600	Active TSS	GM12878-XiMat	blood
11	chr6:24402800-24404600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:24402800-24404600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:24402800-24404600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:24402800-24404600	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr6:24402800-24404600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:24402800-24404600	Active TSS	Colon Smooth Muscle	Colon
17	chr6:24402800-24404600	Active TSS	Psoas Muscle	Psoas
18	chr6:24402800-24404600	Active TSS	Right Atrium	heart
19	chr6:24402800-24404600	Active TSS	Right Ventricle	heart
20	chr6:24402800-24404600	Active TSS	HSMMtube	muscle
21	chr6:24402800-24404600	Active TSS	NHLF	lung
22	chr6:24402800-24405400	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:24402800-24405400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr6:24402800-24405800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:24403000-24404600	Active TSS	Fetal Intestine Large	intestine
26	chr6:24403000-24404600	Active TSS	Fetal Stomach	stomach
27	chr6:24403000-24404800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:24403000-24404800	Active TSS	HMEC	breast
29	chr6:24403000-24405000	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:24403000-24405400	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:24403400-24404600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:24403400-24404800	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr6:24403800-24404600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:24403800-24404600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:24403800-24404600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:24403800-24404600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:24403800-24404600	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr6:24403800-24404600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:24403800-24404600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr6:24403800-24404600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:24403800-24404600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr6:24403800-24404600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr6:24403800-24404600	Flanking Active TSS	Fetal Lung	lung
44	chr6:24403800-24404600	Flanking Active TSS	Dnd41	blood
45	chr6:24403800-24404600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:24403800-24404600	Flanking Active TSS	Osteobl	bone
47	chr6:24403800-24404800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:24403800-24404800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:24403800-24404800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:24403800-24405200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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