Variant report

Variant	rs13218577
Chromosome Location	chr6:128328289-128328290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11154433	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12055782	0.81[AMR][1000 genomes]
rs13197257	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13200150	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13219424	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2326670	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28360516	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34601789	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903663	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs45582334	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905941	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936878	0.81[AMR][1000 genomes]
rs9375544	0.81[AMR][1000 genomes]
rs9388612	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
3	chr6:128294400-128330600	Weak transcription	NHDF-Ad	bronchial
4	chr6:128297400-128334000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:128298000-128352600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:128298200-128334600	Weak transcription	Fetal Heart	heart
7	chr6:128302600-128331400	Weak transcription	Gastric	stomach
8	chr6:128302800-128343800	Weak transcription	Ovary	ovary
9	chr6:128304000-128329200	Weak transcription	Fetal Lung	lung
10	chr6:128304600-128328600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:128305200-128353000	Weak transcription	Left Ventricle	heart
12	chr6:128306000-128329000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:128306000-128334000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:128306000-128343200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:128307200-128340800	Weak transcription	HSMMtube	muscle
16	chr6:128307400-128329000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:128307800-128370800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:128311600-128387200	Weak transcription	NH-A	brain
19	chr6:128311800-128378400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:128314000-128367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:128320400-128340600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:128320600-128330600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:128320800-128334200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:128320800-128350200	Weak transcription	Fetal Thymus	thymus
25	chr6:128320800-128357800	Weak transcription	Fetal Intestine Small	intestine
26	chr6:128320800-128388200	Weak transcription	NHEK	skin
27	chr6:128322400-128332800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:128326400-128329000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:128326400-128338200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:128326400-128342800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:128326400-128351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:128326600-128328400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:128326600-128328400	Weak transcription	HepG2	liver
34	chr6:128326600-128330000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:128326600-128330800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:128326600-128331200	Weak transcription	Osteobl	bone
37	chr6:128326600-128343400	Weak transcription	Fetal Intestine Large	intestine
38	chr6:128326600-128356600	Weak transcription	HSMM	muscle
39	chr6:128326600-128388200	Weak transcription	HMEC	breast
40	chr6:128327000-128329600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:128327000-128340800	Weak transcription	Primary B cells from cord blood	blood
42	chr6:128327600-128329600	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links