Variant report

Variant	rs28360516
Chromosome Location	chr6:128302874-128302875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11154433	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12055782	0.82[EUR][1000 genomes]
rs13200150	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13218577	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13219424	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2326670	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34601789	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3903663	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45582334	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6905941	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936878	0.82[EUR][1000 genomes]
rs9375544	0.82[EUR][1000 genomes]
rs9388610	0.82[EUR][1000 genomes]
rs9388612	0.82[EUR][1000 genomes]
rs9402011	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128280400-128304600	Weak transcription	Fetal Brain Male	brain
2	chr6:128285600-128307400	Weak transcription	Aorta	Aorta
3	chr6:128287200-128309000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:128287600-128308600	Weak transcription	Esophagus	oesophagus
5	chr6:128287800-128303600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:128288000-128304800	Weak transcription	Stomach Mucosa	stomach
7	chr6:128288000-128307600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:128288600-128305400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:128288600-128306800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:128288600-128321800	Weak transcription	Small Intestine	intestine
11	chr6:128288800-128303800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
13	chr6:128290000-128308200	Strong transcription	HepG2	liver
14	chr6:128291200-128304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:128292400-128306400	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr6:128292400-128307600	Strong transcription	Liver	Liver
17	chr6:128292600-128307000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr6:128293000-128303800	Weak transcription	Spleen	Spleen
19	chr6:128293000-128305400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
21	chr6:128293800-128307800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:128294000-128306200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:128294400-128330600	Weak transcription	NHDF-Ad	bronchial
24	chr6:128295000-128304200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:128296000-128303800	Weak transcription	A549	lung
26	chr6:128296000-128307000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:128296600-128303400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:128296600-128305000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:128296800-128307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:128296800-128307600	Strong transcription	Fetal Intestine Large	intestine
31	chr6:128297000-128304400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:128297200-128307200	Strong transcription	HSMMtube	muscle
33	chr6:128297400-128334000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:128297800-128304600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:128297800-128308200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:128297800-128312600	Weak transcription	Colonic Mucosa	Colon
37	chr6:128298000-128303800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:128298000-128304200	Weak transcription	NHLF	lung
39	chr6:128298000-128307400	Weak transcription	Fetal Brain Female	brain
40	chr6:128298000-128352600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:128298200-128307200	Weak transcription	Fetal Kidney	kidney
42	chr6:128298200-128313800	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:128298200-128334600	Weak transcription	Fetal Heart	heart
44	chr6:128298600-128303600	Weak transcription	Fetal Lung	lung
45	chr6:128298800-128304400	Weak transcription	HMEC	breast
46	chr6:128299000-128306200	Weak transcription	Placenta	Placenta
47	chr6:128299000-128317200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:128299400-128303800	Strong transcription	Fetal Intestine Small	intestine
49	chr6:128299400-128304600	Strong transcription	Fetal Stomach	stomach
50	chr6:128299800-128305800	Weak transcription	Primary B cells from peripheral blood	blood

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