Variant report

Variant	rs13219545
Chromosome Location	chr6:70327124-70327125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:70327096-70327442	H1-hESC	embryonic stem cell:	n/a	chr6:70327278-70327290 chr6:70327256-70327268 chr6:70327234-70327246
2	YY1	chr6:70327093-70327415	GM12892	blood:	n/a	chr6:70327278-70327290 chr6:70327256-70327268 chr6:70327234-70327246
3	TEAD4	chr6:70327118-70327402	K562	blood:	n/a	n/a
4	TEAD4	chr6:70327066-70327517	K562	blood:	n/a	n/a
5	YY1	chr6:70327066-70327432	H1-hESC	embryonic stem cell:	n/a	chr6:70327278-70327290 chr6:70327256-70327268 chr6:70327234-70327246
6	YY1	chr6:70327092-70327402	GM12878	blood:	n/a	chr6:70327278-70327290 chr6:70327256-70327268 chr6:70327234-70327246
7	YY1	chr6:70326914-70327417	K562	blood:	n/a	chr6:70327278-70327290 chr6:70327256-70327268 chr6:70327234-70327246
8	YY1	chr6:70327003-70327426	K562	blood:	n/a	chr6:70327278-70327290 chr6:70327256-70327268 chr6:70327234-70327246

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70318773..70320387-chr6:70325810..70327423,2	K562	blood:

Variant related genes	Relation type
ENSG00000265362	TF binding region

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10455226	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455693	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10455694	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10485247	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10485248	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12110750	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12111448	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12196517	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12205972	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13190768	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13194080	0.84[AMR][1000 genomes]
rs13197270	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13201074	0.91[EUR][1000 genomes]
rs13201075	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13201211	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13201510	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13201566	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13202232	0.88[EUR][1000 genomes]
rs13204189	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13204741	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13208842	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13213160	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13213316	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13217651	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13218004	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13218124	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1379449	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1379450	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1379451	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16867833	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867838	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16867841	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16880700	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17762826	0.88[EUR][1000 genomes]
rs1812373	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960318	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28368982	0.88[AMR][1000 genomes]
rs28394301	0.88[AMR][1000 genomes]
rs28482057	0.88[AMR][1000 genomes]
rs28600278	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28655215	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28712111	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28716626	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs310261	0.88[EUR][1000 genomes]
rs310266	0.91[EUR][1000 genomes]
rs33955960	0.88[EUR][1000 genomes]
rs34013469	0.91[EUR][1000 genomes]
rs34029814	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34036103	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34100607	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34180490	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34221170	0.91[EUR][1000 genomes]
rs34265376	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34376437	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34384257	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34687710	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34696652	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34706654	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34793744	0.88[EUR][1000 genomes]
rs34868155	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34972731	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35126149	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35141678	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35228692	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35298805	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35512872	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35515278	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35536341	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35581460	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35634787	0.83[EUR][1000 genomes]
rs35902949	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35994746	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36101143	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55726661	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55764460	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55771945	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55773264	0.91[EUR][1000 genomes]
rs55915502	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55992249	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56013312	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56050333	0.91[EUR][1000 genomes]
rs56121698	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56217248	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56358405	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58366598	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58391290	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58840962	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59766620	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62408330	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62408340	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62408351	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62408962	0.88[EUR][1000 genomes]
rs6455329	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6455330	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6905260	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6924877	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6926348	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7743867	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7748172	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748612	0.93[EUR][1000 genomes]
rs7748687	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7755805	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7759665	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7761366	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766483	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7769194	0.93[EUR][1000 genomes]
rs7772811	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7773916	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7774239	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446145	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446146	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454846	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454849	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454852	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454853	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022847	chr6:70300521-70337899	Enhancers Bivalent Enhancer Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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