Variant report

Variant	rs55992249
Chromosome Location	chr6:70342252-70342253
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70335202..70336820-chr6:70342123..70344117,2	MCF-7	breast:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10455226	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455693	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10455694	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10485247	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10485248	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12110750	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12111448	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12196517	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12205972	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13190768	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13194080	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13197270	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13201074	0.86[EUR][1000 genomes]
rs13201075	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13201211	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13201510	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13201566	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13202232	0.93[EUR][1000 genomes]
rs13204189	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13204741	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13208842	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13213160	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13213316	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13217651	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13218004	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13218124	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13219545	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379449	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1379450	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1379451	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16867833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867838	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16867841	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16880700	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17762826	0.83[EUR][1000 genomes]
rs1812373	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960318	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28368982	0.86[AMR][1000 genomes]
rs28394301	0.86[AMR][1000 genomes]
rs28482057	0.86[AMR][1000 genomes]
rs28600278	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28655215	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28712111	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28716626	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs310261	0.83[EUR][1000 genomes]
rs310266	0.86[EUR][1000 genomes]
rs33955960	0.93[EUR][1000 genomes]
rs34013469	0.86[EUR][1000 genomes]
rs34029814	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34036103	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34100607	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34180490	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34221170	0.86[EUR][1000 genomes]
rs34265376	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34376437	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34384257	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34687710	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34696652	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34706654	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34793744	0.93[EUR][1000 genomes]
rs34868155	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34972731	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35126149	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35141678	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35228692	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35298805	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35512872	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35515278	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35536341	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35581460	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35902949	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35994746	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36101143	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55726661	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55764460	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55771945	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55773264	0.89[EUR][1000 genomes]
rs55915502	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56013312	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56050333	0.86[EUR][1000 genomes]
rs56121698	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56217248	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56358405	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58366598	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58391290	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58840962	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59766620	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62408330	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62408340	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62408351	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62408962	0.93[EUR][1000 genomes]
rs6455329	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6455330	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6905260	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910099	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6924877	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6926348	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7743867	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7748172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748612	0.88[EUR][1000 genomes]
rs7748687	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7755805	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7759665	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7761366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766483	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7769194	0.88[EUR][1000 genomes]
rs7772811	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7773916	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7774239	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446145	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446146	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446147	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454853	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70341200-70343000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:70341200-70343000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:70341400-70342400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:70342200-70342600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:70342200-70342800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:70342200-70343000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:70342200-70343000	Enhancers	GM12878-XiMat	blood
8	chr6:70342200-70343800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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