Variant report
Variant | rs13220707 |
---|---|
Chromosome Location | chr6:49841884-49841885 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10948532 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11752877 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12200099 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs12529329 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13201512 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs13215663 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13215868 | 1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13220694 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1538194 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs614058 | 1.00[JPT][hapmap] |
rs626858 | 1.00[JPT][hapmap] |
rs627990 | 1.00[JPT][hapmap] |
rs6905702 | 1.00[JPT][hapmap] |
rs945931 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9473672 | 1.00[JPT][hapmap] |
rs9473674 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9473680 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
3 | nsv5294 | chr6:49816788-49853346 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |