Variant report
| Variant | rs6905702 |
|---|---|
| Chromosome Location | chr6:49978065-49978066 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49952757..49954600-chr6:49977034..49979373,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10948532 | 1.00[JPT][hapmap] |
| rs12200099 | 1.00[JPT][hapmap] |
| rs13201512 | 1.00[JPT][hapmap] |
| rs13215868 | 1.00[JPT][hapmap] |
| rs13220707 | 1.00[JPT][hapmap] |
| rs1538194 | 1.00[JPT][hapmap] |
| rs613497 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs614058 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs626858 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs627990 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs638963 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs678584 | 1.00[ASN][1000 genomes] |
| rs73739935 | 1.00[ASN][1000 genomes] |
| rs7772230 | 1.00[ASN][1000 genomes] |
| rs932741 | 0.81[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs945931 | 1.00[JPT][hapmap] |
| rs9473672 | 1.00[JPT][hapmap] |
| rs9473674 | 1.00[JPT][hapmap] |
| rs9473680 | 1.00[JPT][hapmap] |
| rs9473708 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9473714 | 1.00[ASN][1000 genomes] |
| rs9473716 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv5295 | chr6:49955078-50007710 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
