Variant report

Variant	rs13223519
Chromosome Location	chr7:56151555-56151556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:56149181..56151759-chr7:56158408..56161980,3	K562	blood:
2	chr7:56146186..56148845-chr7:56149332..56152482,3	K562	blood:

Variant related genes	Relation type
ENSG00000164776	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10085802	1.00[ASN][1000 genomes]
rs10253539	1.00[ASN][1000 genomes]
rs10253680	1.00[ASN][1000 genomes]
rs12555	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229704	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233834	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234504	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238029	0.82[EUR][1000 genomes]
rs13240361	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13241531	1.00[ASN][1000 genomes]
rs13247558	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151447	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013197	0.81[ASN][1000 genomes]
rs2304375	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2331184	1.00[ASN][1000 genomes]
rs33922584	1.00[ASN][1000 genomes]
rs34023503	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34154824	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34319969	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34334997	1.00[ASN][1000 genomes]
rs34477367	1.00[AFR][1000 genomes]
rs34822782	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35007015	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35033933	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35058595	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35102507	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35136814	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35347055	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35506072	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515485	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35523043	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35581685	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818005	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35881493	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36044787	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36049923	1.00[ASN][1000 genomes]
rs36148650	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778868	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3816089	1.00[JPT][hapmap]
rs4307293	1.00[JPT][hapmap]
rs4947531	0.82[ASN][1000 genomes]
rs4948089	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948101	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs71543775	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs71543776	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs71543777	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs71543786	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73126344	1.00[ASN][1000 genomes]
rs816219	0.83[ASN][1000 genomes]
rs816242	0.96[ASN][1000 genomes]
rs816412	1.00[ASN][1000 genomes]
rs816413	1.00[ASN][1000 genomes]
rs816415	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
9	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
11	nsv1034712	chr7:56146885-56605592	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv538861	chr7:56146885-56605592	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56134000-56152000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:56134000-56167800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:56134200-56167600	Weak transcription	Small Intestine	intestine
4	chr7:56138800-56156200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:56138800-56167600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:56140400-56152000	Strong transcription	Dnd41	blood
7	chr7:56140800-56153000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:56142000-56151600	Strong transcription	Thymus	Thymus
9	chr7:56142000-56168000	Weak transcription	GM12878-XiMat	blood
10	chr7:56142200-56167800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:56142400-56156400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:56142600-56159800	Strong transcription	Fetal Intestine Small	intestine
13	chr7:56143800-56153200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:56144200-56151800	Strong transcription	Fetal Intestine Large	intestine
15	chr7:56144200-56152000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:56144200-56157200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:56145200-56153000	Genic enhancers	Fetal Muscle Leg	muscle
18	chr7:56146000-56153000	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr7:56146000-56167800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:56146200-56157400	Weak transcription	K562	blood
21	chr7:56147000-56167400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:56147400-56158000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:56147400-56167000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:56147400-56169800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:56147600-56155000	Weak transcription	Colonic Mucosa	Colon
26	chr7:56147600-56155800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:56147600-56160400	Weak transcription	Fetal Brain Male	brain
28	chr7:56147600-56167200	Weak transcription	HMEC	breast
29	chr7:56147600-56167400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:56147800-56151600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:56147800-56155400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr7:56147800-56157000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:56147800-56159600	Weak transcription	NHDF-Ad	bronchial
34	chr7:56147800-56160200	Weak transcription	HSMM	muscle
35	chr7:56147800-56160600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:56147800-56160800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:56147800-56164200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:56147800-56167200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:56147800-56167400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:56148000-56152800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:56148000-56165600	Weak transcription	Primary B cells from cord blood	blood
42	chr7:56148000-56167200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:56148600-56151600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:56148800-56167400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:56149400-56156400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr7:56149600-56167200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:56149800-56151600	Genic enhancers	Brain Hippocampus Middle	brain
48	chr7:56149800-56153000	Weak transcription	Osteobl	bone
49	chr7:56149800-56154200	Weak transcription	Fetal Brain Female	brain
50	chr7:56149800-56154400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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