Variant report

Variant	rs34154824
Chromosome Location	chr7:56132957-56132958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:56117123..56123487-chr7:56128716..56133468,11	MCF-7	breast:
2	chr7:56131320..56133312-chr7:56141582..56144695,3	MCF-7	breast:
3	chr7:56128796..56131648-chr7:56132241..56134727,3	MCF-7	breast:
4	chr7:56126631..56129395-chr7:56129953..56133299,4	MCF-7	breast:
5	chr7:56031242..56032808-chr7:56131882..56133699,2	K562	blood:
6	chr7:56129744..56132010-chr7:56132396..56134919,2	K562	blood:
7	chr7:56132043..56135542-chr7:56146792..56149237,3	K562	blood:
8	chr7:56130207..56133425-chr7:56142360..56145052,4	K562	blood:
9	chr7:56132081..56135205-chr7:56137628..56140599,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146733	Chromatin interaction
ENSG00000129103	Chromatin interaction
ENSG00000146731	Chromatin interaction
ENSG00000207168	Chromatin interaction
ENSG00000146729	Chromatin interaction
ENSG00000206603	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10085802	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234801	0.98[MKK][hapmap]
rs10253539	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253680	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973407	0.94[MKK][hapmap]
rs12555	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223519	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232704	0.80[EUR][1000 genomes]
rs13233037	0.80[EUR][1000 genomes]
rs13233834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234504	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238029	1.00[EUR][1000 genomes]
rs13238083	0.80[EUR][1000 genomes]
rs13240361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13241531	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247558	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151447	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013197	0.81[ASN][1000 genomes]
rs2304375	0.85[ASN][1000 genomes]
rs2331184	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607542	0.98[MKK][hapmap]
rs33922584	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023503	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34319969	1.00[ASN][1000 genomes]
rs34334997	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34573211	0.96[EUR][1000 genomes]
rs34602500	0.98[MKK][hapmap]
rs34822782	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35007015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35033933	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35058595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102507	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35136814	0.92[ASN][1000 genomes]
rs35347055	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35506072	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35523043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35581685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818005	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35850770	0.98[MKK][hapmap]
rs35881493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36044787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36049923	1.00[ASN][1000 genomes]
rs36148650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778868	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4947531	0.82[ASN][1000 genomes]
rs4948089	0.82[ASN][1000 genomes]
rs4948101	0.92[ASN][1000 genomes]
rs71543774	0.80[EUR][1000 genomes]
rs71543775	0.92[ASN][1000 genomes]
rs71543776	0.89[ASN][1000 genomes]
rs71543777	0.92[ASN][1000 genomes]
rs71543786	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73126344	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs816219	0.83[ASN][1000 genomes]
rs816242	0.96[ASN][1000 genomes]
rs816412	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816413	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816415	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
9	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56131400-56133000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:56131400-56133200	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr7:56131400-56133200	Active TSS	Brain Anterior Caudate	brain
4	chr7:56131400-56133200	Active TSS	Brain Germinal Matrix	brain
5	chr7:56131400-56133200	Active TSS	Colon Smooth Muscle	Colon
6	chr7:56131400-56133200	Active TSS	Thymus	Thymus
7	chr7:56131600-56133000	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr7:56131600-56133000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr7:56131600-56133000	Active TSS	Brain Hippocampus Middle	brain
10	chr7:56131600-56133000	Active TSS	Fetal Intestine Small	intestine
11	chr7:56131600-56133200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:56131600-56133200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:56131600-56133200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr7:56131600-56133200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr7:56131600-56133200	Active TSS	Colonic Mucosa	Colon
16	chr7:56131600-56133200	Active TSS	Esophagus	oesophagus
17	chr7:56131600-56133200	Active TSS	Fetal Lung	lung
18	chr7:56131600-56133200	Active TSS	Fetal Muscle Trunk	muscle
19	chr7:56131600-56133200	Active TSS	Left Ventricle	heart
20	chr7:56131600-56133200	Active TSS	Ovary	ovary
21	chr7:56131600-56133200	Active TSS	Psoas Muscle	Psoas
22	chr7:56131600-56133200	Active TSS	Right Ventricle	heart
23	chr7:56131600-56133600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:56131600-56133800	Active TSS	Placenta	Placenta
25	chr7:56131800-56133000	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr7:56131800-56133000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:56131800-56133000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:56131800-56133000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr7:56131800-56133000	Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr7:56131800-56133000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr7:56131800-56133000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:56131800-56133000	Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr7:56131800-56133000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:56131800-56133000	Active TSS	Adipose Nuclei	Adipose
35	chr7:56131800-56133000	Active TSS	Brain Cingulate Gyrus	brain
36	chr7:56131800-56133000	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr7:56131800-56133000	Active TSS	Fetal Muscle Leg	muscle
38	chr7:56131800-56133000	Active TSS	Fetal Stomach	stomach
39	chr7:56131800-56133000	Active TSS	Pancreas	Pancrea
40	chr7:56131800-56133000	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr7:56131800-56133000	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr7:56131800-56133000	Active TSS	HUVEC	blood vessel
43	chr7:56131800-56133000	Active TSS	NH-A	brain
44	chr7:56131800-56133200	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr7:56131800-56133200	Active TSS	H1 Cell Line	embryonic stem cell
46	chr7:56131800-56133200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:56131800-56133200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:56131800-56133200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:56131800-56133200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:56131800-56133200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links