Variant report

Variant	rs13224557
Chromosome Location	chr7:69376723-69376724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69362288..69364845-chr7:69376146..69378504,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12698809	0.81[ASN][1000 genomes]
rs12698810	0.81[ASN][1000 genomes]
rs12698818	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698821	0.85[ASN][1000 genomes]
rs12698823	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12698824	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12698827	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698828	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698829	0.82[EUR][1000 genomes]
rs12698831	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12698832	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12698833	0.89[ASN][1000 genomes]
rs12698854	0.83[ASN][1000 genomes]
rs12698860	0.83[ASN][1000 genomes]
rs12698863	0.85[ASN][1000 genomes]
rs13221186	0.85[ASN][1000 genomes]
rs13221694	0.88[ASN][1000 genomes]
rs13227197	0.83[ASN][1000 genomes]
rs13228686	0.83[ASN][1000 genomes]
rs13229256	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238398	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71535673	0.83[ASN][1000 genomes]
rs71535674	0.81[ASN][1000 genomes]
rs7785360	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788868	0.83[ASN][1000 genomes]
rs7789364	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv916265	chr7:69367265-69433076	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1031593	chr7:69367316-69445052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv538921	chr7:69367316-69445052	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69368800-69377000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:69368800-69377600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:69372000-69377000	Weak transcription	Right Ventricle	heart
4	chr7:69372000-69377400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:69373600-69377200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:69375000-69377200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:69375000-69377200	ZNF genes & repeats	Dnd41	blood
8	chr7:69375400-69378400	Weak transcription	Psoas Muscle	Psoas
9	chr7:69375800-69377200	ZNF genes & repeats	Fetal Stomach	stomach
10	chr7:69375800-69377400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:69376000-69376800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:69376000-69376800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:69376000-69377000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:69376000-69377000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:69376000-69377000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr7:69376000-69377200	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr7:69376000-69377400	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr7:69376200-69376800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr7:69376200-69377000	ZNF genes & repeats	Pancreas	Pancrea
20	chr7:69376200-69377200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr7:69376200-69377400	ZNF genes & repeats	Thymus	Thymus
22	chr7:69376400-69376800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr7:69376400-69376800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:69376400-69377000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:69376400-69377000	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr7:69376400-69377000	ZNF genes & repeats	Fetal Lung	lung
27	chr7:69376600-69377000	ZNF genes & repeats	Ovary	ovary
28	chr7:69376600-69377200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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