Variant report

Variant	rs7788868
Chromosome Location	chr7:69598198-69598199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12669460	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12674397	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12698811	0.90[ASN][1000 genomes]
rs12698818	0.83[ASN][1000 genomes]
rs12698821	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12698827	0.81[ASN][1000 genomes]
rs12698828	0.81[ASN][1000 genomes]
rs12698831	0.81[ASN][1000 genomes]
rs12698832	0.85[ASN][1000 genomes]
rs12698837	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12698845	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12698852	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12698854	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698860	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698863	0.92[ASN][1000 genomes]
rs12698868	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12698874	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12698878	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12698885	0.90[AFR][1000 genomes]
rs13221186	0.97[ASN][1000 genomes]
rs13221694	0.95[ASN][1000 genomes]
rs13224557	0.83[ASN][1000 genomes]
rs13227197	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228686	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13229256	0.83[ASN][1000 genomes]
rs13230441	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13238398	0.81[ASN][1000 genomes]
rs17141190	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35308787	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6460540	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6955333	1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap]
rs71535673	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71535674	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7782663	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7785360	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69587000-69599400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69591600-69602400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr7:69593200-69599200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:69594600-69600000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:69595200-69599800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:69595400-69599800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:69596600-69600200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:69596800-69598600	Enhancers	HSMM	muscle
9	chr7:69596800-69599400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:69596800-69599400	Enhancers	Fetal Muscle Leg	muscle
11	chr7:69596800-69599800	Enhancers	Fetal Stomach	stomach
12	chr7:69596800-69602200	Enhancers	Fetal Heart	heart
13	chr7:69597000-69599600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:69597200-69598200	Enhancers	HSMMtube	muscle
15	chr7:69597200-69598400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:69597200-69599200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:69597200-69599400	Enhancers	Adipose Nuclei	Adipose
18	chr7:69597200-69599600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:69597200-69599600	Enhancers	Brain Anterior Caudate	brain
20	chr7:69597200-69599600	Enhancers	Brain Substantia Nigra	brain
21	chr7:69597400-69598200	Enhancers	Brain Angular Gyrus	brain
22	chr7:69597400-69598200	Flanking Active TSS	Fetal Brain Male	brain
23	chr7:69597400-69598600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:69597400-69599000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr7:69597400-69599400	Enhancers	Brain Hippocampus Middle	brain
26	chr7:69597400-69599600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:69597400-69600000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:69597600-69598200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr7:69597600-69598600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:69597600-69599600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:69597800-69598200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:69597800-69598600	Enhancers	Fetal Thymus	thymus
33	chr7:69597800-69599000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:69597800-69599400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:69597800-69601800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:69598000-69598400	Weak transcription	Left Ventricle	heart
37	chr7:69598000-69599000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:69598000-69599000	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr7:69598000-69599400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:69598000-69599600	Enhancers	Fetal Lung	lung
41	chr7:69598000-69601000	Enhancers	Brain Germinal Matrix	brain
42	chr7:69598000-69601400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:69598000-69602800	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links