Variant report

Variant	rs12698885
Chromosome Location	chr7:69729414-69729415
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12669460	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12674397	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12698845	0.81[ASN][1000 genomes]
rs12698852	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12698854	0.97[AFR][1000 genomes]
rs12698860	0.81[AFR][1000 genomes]
rs12698868	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12698874	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12698878	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12698890	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698891	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12698894	0.85[EUR][1000 genomes]
rs12698900	0.97[ASN][1000 genomes]
rs13227197	0.84[AFR][1000 genomes]
rs13230441	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13246213	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141190	0.81[ASN][1000 genomes]
rs2204339	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34215431	0.84[ASN][1000 genomes]
rs35308787	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6460540	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6955333	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6974716	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71535673	0.84[AFR][1000 genomes]
rs71535674	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7782663	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7788868	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69724200-69731800	Weak transcription	Fetal Brain Female	brain
2	chr7:69724600-69731200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:69724800-69732400	Weak transcription	Fetal Lung	lung
4	chr7:69729000-69729800	Enhancers	Ovary	ovary

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