Variant report

Variant	rs34215431
Chromosome Location	chr7:69658345-69658346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69652043..69654118-chr7:69657486..69659961,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12669460	0.92[ASN][1000 genomes]
rs12674397	0.91[ASN][1000 genomes]
rs12698829	0.92[ASN][1000 genomes]
rs12698831	0.83[EUR][1000 genomes]
rs12698832	0.83[EUR][1000 genomes]
rs12698837	0.88[ASN][1000 genomes]
rs12698845	0.91[ASN][1000 genomes]
rs12698852	0.92[ASN][1000 genomes]
rs12698863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12698868	0.97[ASN][1000 genomes]
rs12698874	0.91[ASN][1000 genomes]
rs12698885	0.84[ASN][1000 genomes]
rs12698890	0.84[ASN][1000 genomes]
rs12698900	0.81[ASN][1000 genomes]
rs13221694	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13230441	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13246213	0.84[ASN][1000 genomes]
rs17141190	0.91[ASN][1000 genomes]
rs2204339	0.84[ASN][1000 genomes]
rs6460540	0.91[ASN][1000 genomes]
rs7782663	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv607430	chr7:69658160-69702047	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69655000-69692400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69658200-69658600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links