Variant report

Variant	rs12698890
Chromosome Location	chr7:69758080-69758081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12669460	0.83[ASN][1000 genomes]
rs12674397	0.94[ASN][1000 genomes]
rs12698845	0.81[ASN][1000 genomes]
rs12698852	0.83[ASN][1000 genomes]
rs12698868	0.87[ASN][1000 genomes]
rs12698874	0.94[ASN][1000 genomes]
rs12698885	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698891	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12698894	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12698900	0.97[ASN][1000 genomes]
rs13230441	0.84[ASN][1000 genomes]
rs13246213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141190	0.81[ASN][1000 genomes]
rs2204339	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34215431	0.84[ASN][1000 genomes]
rs35308787	0.90[EUR][1000 genomes]
rs6460540	0.94[ASN][1000 genomes]
rs6955333	1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6974716	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7782663	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69750000-69763800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:69751000-69762800	Weak transcription	Primary T cells from cord blood	blood
3	chr7:69757200-69758200	Enhancers	Brain Substantia Nigra	brain
4	chr7:69757400-69758200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:69757600-69758200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:69757800-69758200	Enhancers	Brain Angular Gyrus	brain
7	chr7:69758000-69758200	Enhancers	Ovary	ovary
8	chr7:69758000-69758400	Enhancers	Fetal Intestine Small	intestine

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