Variant report

Variant	rs13228817
Chromosome Location	chr7:124288966-124288967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10264807	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10265015	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10266863	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1404404	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1524758	0.80[EUR][1000 genomes]
rs1540830	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917361	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1917362	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2049438	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2049439	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2204380	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2204381	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34541525	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4731194	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7784041	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124284800-124289000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:124285200-124289400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:124286200-124289400	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:124287600-124289000	Enhancers	Fetal Lung	lung
5	chr7:124287600-124289400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:124288800-124289000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:124288800-124289200	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links