Variant report

Variant	rs1524758
Chromosome Location	chr7:124237543-124237544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10233266	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10954042	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12668586	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13228817	0.80[EUR][1000 genomes]
rs13245806	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1524757	0.93[EUR][1000 genomes]
rs1540830	0.80[EUR][1000 genomes]
rs1917361	0.82[EUR][1000 genomes]
rs2049438	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2049439	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2204380	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2204381	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6950890	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7793397	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031885	chr7:124236838-124268655	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124237000-124237600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:124237000-124237800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:124237000-124238000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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