Variant report

Variant	rs13229788
Chromosome Location	chr7:122277215-122277216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12706425	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12706426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34182275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34264090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34420222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34458584	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34731459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34955892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35127684	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35331526	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35604970	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35967022	0.87[AMR][1000 genomes]
rs71574708	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71574709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122269800-122288000	Weak transcription	HepG2	liver
2	chr7:122276400-122283400	Weak transcription	Fetal Lung	lung
3	chr7:122276800-122283200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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