Variant report

Variant	rs132304
Chromosome Location	chr22:29556739-29556740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12628033	0.85[ASN][1000 genomes]
rs12628352	0.85[ASN][1000 genomes]
rs132292	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs132296	0.85[ASN][1000 genomes]
rs132300	0.84[ASN][1000 genomes]
rs2301445	0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2301446	1.00[CHB][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs2347996	0.84[ASN][1000 genomes]
rs3884934	0.92[ASN][1000 genomes]
rs4035128	0.92[ASN][1000 genomes]
rs469983	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs4823016	0.92[ASN][1000 genomes]
rs4823018	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs5752871	0.84[ASN][1000 genomes]
rs5763006	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs9625722	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524483	chr22:29525126-29630337	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv817986	chr22:29540297-29568963	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs132304	MYO18B	cis	cerebellum	SCAN
rs132304	SEC14L3	cis	cerebellum	SCAN
rs132304	SGSM1	cis	parietal	SCAN
rs132304	PIWIL3	cis	cerebellum	SCAN
rs132304	TUG1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29551200-29561400	Weak transcription	Dnd41	blood
2	chr22:29554600-29563400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:29554800-29557600	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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