Variant report
| Variant | rs13230452 |
|---|---|
| Chromosome Location | chr7:136896856-136896857 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10228861 | 0.85[EUR][1000 genomes] |
| rs10488606 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10488607 | 0.91[EUR][1000 genomes] |
| rs13221814 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1593294 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17168990 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1839780 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2017578 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs33914231 | 0.85[AFR][1000 genomes] |
| rs34396191 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34624085 | 0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35315976 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35837497 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4338046 | 0.81[AFR][1000 genomes] |
| rs66483613 | 0.81[AFR][1000 genomes] |
| rs67323673 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67726386 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6956523 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6970141 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs71541342 | 0.82[EUR][1000 genomes] |
| rs727184 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs727185 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7805529 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv831149 | chr7:136831665-137006468 | Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv608464 | chr7:136882925-136935459 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv608465 | chr7:136888610-136935459 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136887000-136897200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr7:136893600-136897200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
