Variant report

Variant	rs10488606
Chromosome Location	chr7:136916976-136916977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136915442..136917934-chr7:136955995..136958425,2	K562	blood:
2	chr7:136915740..136917893-chr7:136923118..136925670,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228861	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10488607	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13221814	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13230452	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1593294	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17168990	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17169018	1.00[JPT][hapmap]
rs1839780	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2017578	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33923356	0.89[AFR][1000 genomes]
rs34396191	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34624085	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35315976	0.84[EUR][1000 genomes]
rs35837497	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4338046	1.00[JPT][hapmap]
rs67323673	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67726386	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6956523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6970141	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs727184	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727185	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv608464	chr7:136882925-136935459	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv608465	chr7:136888610-136935459	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136901600-136922800	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:136902000-136933800	Weak transcription	Fetal Brain Female	brain
3	chr7:136906600-136925200	Weak transcription	Fetal Stomach	stomach
4	chr7:136909200-136922600	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:136909600-136935800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136909800-136926200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:136909800-136943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:136911000-136922400	Weak transcription	Brain Substantia Nigra	brain
9	chr7:136911000-136927000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:136911200-136925800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:136911600-136936400	Weak transcription	Fetal Heart	heart
12	chr7:136911800-136920800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:136912400-136922800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:136913400-136937200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:136913800-136918400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:136915000-136918600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:136915200-136935000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:136915800-136917800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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