Variant report

Variant	rs17169018
Chromosome Location	chr7:136953783-136953784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10488606	1.00[JPT][hapmap]
rs17168990	1.00[JPT][hapmap]
rs1839780	1.00[JPT][hapmap]
rs4338046	1.00[JPT][hapmap]
rs6956523	1.00[JPT][hapmap]
rs727185	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17169018	ACTR8	trans	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:136939000-136954600	Weak transcription	Fetal Stomach	stomach
3	chr7:136940600-136957000	Weak transcription	Brain Angular Gyrus	brain
4	chr7:136947600-136956600	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:136947800-136959800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:136949000-136960800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:136952200-136956400	Weak transcription	Liver	Liver
8	chr7:136952200-136960000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:136952200-136960400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:136952200-136971000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:136952600-136960400	Weak transcription	Brain Substantia Nigra	brain
12	chr7:136953200-136955600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:136953400-136954000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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