Variant report

Variant	rs1323102
Chromosome Location	chr6:118202225-118202226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1016084	0.94[CHB][hapmap]
rs1028689	1.00[CHB][hapmap]
rs12526002	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12662276	1.00[CHB][hapmap]
rs12664437	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1416423	1.00[CHB][hapmap]
rs2222213	0.94[EUR][1000 genomes]
rs2355789	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2678772	0.90[EUR][1000 genomes]
rs2760239	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2789004	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2789008	0.90[EUR][1000 genomes]
rs4945598	0.84[EUR][1000 genomes]
rs4946285	0.80[EUR][1000 genomes]
rs4946303	1.00[CHB][hapmap]
rs545182	0.90[EUR][1000 genomes]
rs6939974	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs771183	0.90[EUR][1000 genomes]
rs7763925	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118201400-118202800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:118201800-118202600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:118202000-118202800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:118202200-118202800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:118202200-118203000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:118202200-118203600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:118202200-118203600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:118202200-118203600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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