Variant report

Variant	rs12664437
Chromosome Location	chr6:118237088-118237089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1016084	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1028689	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12526002	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662276	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1323102	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1416423	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2355789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760239	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946303	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs505625	0.85[EUR][1000 genomes]
rs7763925	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9374690	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv522455	chr6:118228527-118240685	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118229800-118241400	Weak transcription	Gastric	stomach
2	chr6:118230800-118238000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118230800-118239400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:118232000-118238000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:118236200-118240200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:118236800-118240200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118237000-118240200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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