Variant report
| Variant | rs505625 |
|---|---|
| Chromosome Location | chr6:118152560-118152561 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12200053 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12526002 | 0.89[EUR][1000 genomes] |
| rs12664437 | 0.85[EUR][1000 genomes] |
| rs1878728 | 0.82[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2222213 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2355789 | 0.95[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs2678772 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2760239 | 0.88[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap] |
| rs2788996 | 0.80[GIH][hapmap] |
| rs2789004 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs2789008 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4582411 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4945598 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4946283 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4946285 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs4946287 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4946293 | 0.86[ASN][1000 genomes] |
| rs545182 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs6903494 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6939974 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs771183 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7763418 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532050 | chr6:117528154-118203005 | ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv830786 | chr6:118026955-118201660 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118151200-118157000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
