Variant report

Variant	rs1323283
Chromosome Location	chr1:59211165-59211166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10889116	0.81[ASN][1000 genomes]
rs12127952	0.87[ASN][1000 genomes]
rs1323285	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1969772	0.89[ASN][1000 genomes]
rs2760484	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811872	0.81[ASN][1000 genomes]
rs2811874	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778512	0.81[ASN][1000 genomes]
rs6682817	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59205200-59211200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:59206000-59211200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:59206200-59214200	Weak transcription	Fetal Kidney	kidney
4	chr1:59206200-59221000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:59207600-59220000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:59207800-59211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:59207800-59220000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:59207800-59220000	Weak transcription	Psoas Muscle	Psoas
9	chr1:59208000-59215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:59210600-59212600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:59210800-59211600	Enhancers	NHDF-Ad	bronchial
12	chr1:59210800-59211800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:59210800-59212200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:59210800-59212600	Enhancers	NHEK	skin
15	chr1:59210800-59212800	Enhancers	HMEC	breast
16	chr1:59211000-59212600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links