Variant report

Variant	rs6682817
Chromosome Location	chr1:59206518-59206519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10889116	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1323283	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1323285	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1969772	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760484	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2811872	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2811874	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61778512	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6667106	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59198800-59207200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:59205200-59211200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:59205600-59210800	Weak transcription	HMEC	breast
4	chr1:59205800-59206600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:59205800-59206800	Enhancers	HepG2	liver
6	chr1:59206000-59207800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:59206000-59211200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:59206200-59206600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:59206200-59206600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:59206200-59206600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:59206200-59207400	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:59206200-59214200	Weak transcription	Fetal Kidney	kidney
13	chr1:59206200-59221000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:59206400-59206600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:59206400-59207400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:59206400-59207400	Weak transcription	NHDF-Ad	bronchial
17	chr1:59206400-59207600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links