Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10251563	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10281226	0.82[AMR][1000 genomes]
rs11773694	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11982298	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11982450	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11983087	0.82[AMR][1000 genomes]
rs12216586	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12690893	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12703848	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12703858	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12703864	0.83[AMR][1000 genomes]
rs12703867	0.86[AMR][1000 genomes]
rs13224666	0.82[AMR][1000 genomes]
rs13242095	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1524337	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1880317	0.81[EUR][1000 genomes]
rs1916934	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1916946	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1916947	0.82[AMR][1000 genomes]
rs4612254	0.82[EUR][1000 genomes]
rs6951716	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7796813	0.82[AMR][1000 genomes]
rs7809919	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409548	chrY:16169870-17053457	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:16652800-16687600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrY:16652800-16724800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrY:16672800-16718000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrY:16674400-16687800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chrY:16682200-16688000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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