Variant report

Variant	rs1880317
Chromosome Location	chr7:146620375-146620376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10081247	0.92[CEU][hapmap]
rs10228803	1.00[CEU][hapmap]
rs10238991	0.96[CEU][hapmap]
rs10241470	1.00[CEU][hapmap]
rs10242195	1.00[CEU][hapmap]
rs10243212	0.96[CEU][hapmap]
rs10251563	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10267864	0.87[CEU][hapmap]
rs10268255	1.00[CEU][hapmap]
rs10281226	0.88[EUR][1000 genomes]
rs10500168	0.92[CEU][hapmap]
rs11773694	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11982298	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11982450	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11983087	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12216586	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12690893	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12703847	0.84[CEU][hapmap]
rs12703848	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12703858	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12703863	0.92[CEU][hapmap]
rs12703864	0.88[EUR][1000 genomes]
rs12703867	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12703869	0.92[CEU][hapmap]
rs13224666	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13233800	1.00[CEU][hapmap]
rs13235537	0.81[EUR][1000 genomes]
rs1357705	0.96[CEU][hapmap]
rs1524337	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1916934	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1916936	0.81[CEU][hapmap]
rs1916939	1.00[CEU][hapmap]
rs1916946	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4130001	0.96[CEU][hapmap]
rs4612254	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6951716	0.99[EUR][1000 genomes]
rs7796813	0.87[EUR][1000 genomes]
rs940455	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1027561	chr7:146308783-146762872	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv608940	chr7:146367793-146660924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv531440	chr7:146399958-146691013	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv465191	chr7:146406379-146759900	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv608941	chr7:146406379-146759900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv931854	chr7:146440190-146663300	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv916943	chr7:146445929-146682066	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv522917	chr7:146446767-146694441	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv933923	chr7:146450952-146690007	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1017163	chr7:146451346-146663301	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv539177	chr7:146451346-146663301	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv531441	chr7:146451347-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv534580	chr7:146451347-146730531	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1021251	chr7:146522341-146802125	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv497792	chr7:146526101-146734852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv933723	chr7:146567637-146659437	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv917169	chr7:146581546-146663236	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3425673	chr7:146620116-146620395	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146620000-146620400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:146620200-146620600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:146620200-146620800	Enhancers	Ovary	ovary

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