Variant report

Variant	rs13236178
Chromosome Location	chr7:22245059-22245060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22224897..22227300-chr7:22243632..22245508,2	K562	blood:
2	chr7:22237604..22240424-chr7:22242941..22245756,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1419756	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17146355	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs17146377	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71526390	0.84[AMR][1000 genomes]
rs7385240	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
2	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
3	chr7:22225800-22246800	Strong transcription	Dnd41	blood
4	chr7:22227400-22245600	Strong transcription	HepG2	liver
5	chr7:22233400-22247600	Weak transcription	Psoas Muscle	Psoas
6	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:22233600-22247600	Weak transcription	Right Ventricle	heart
8	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
9	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:22233800-22247400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:22233800-22247400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
14	chr7:22236400-22249200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:22238800-22253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:22239600-22251000	Weak transcription	Adipose Nuclei	Adipose
18	chr7:22241000-22245200	Weak transcription	Colonic Mucosa	Colon
19	chr7:22241000-22247000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:22242000-22247600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:22242200-22245200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:22243200-22245400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:22243200-22247600	Weak transcription	Aorta	Aorta
25	chr7:22243400-22245800	Enhancers	HSMMtube	muscle
26	chr7:22243400-22255800	Weak transcription	Liver	Liver
27	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
28	chr7:22243600-22246000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:22243600-22246400	Weak transcription	Gastric	stomach
30	chr7:22243600-22247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:22243600-22248000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:22243600-22248400	Weak transcription	Spleen	Spleen
33	chr7:22243600-22251400	Weak transcription	Lung	lung
34	chr7:22243600-22256600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:22243600-22258400	Weak transcription	Fetal Intestine Small	intestine
36	chr7:22243800-22245800	Enhancers	Fetal Kidney	kidney
37	chr7:22244000-22245800	Enhancers	Fetal Lung	lung
38	chr7:22244200-22245400	Enhancers	Brain Hippocampus Middle	brain
39	chr7:22244200-22246000	Weak transcription	Left Ventricle	heart
40	chr7:22244200-22251200	Weak transcription	Pancreas	Pancrea
41	chr7:22244200-22258000	Weak transcription	Fetal Intestine Large	intestine
42	chr7:22244200-22258400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr7:22244200-22258600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:22244400-22245200	Enhancers	Brain Substantia Nigra	brain
45	chr7:22244400-22245600	Enhancers	Brain Angular Gyrus	brain
46	chr7:22244400-22247600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:22244400-22247600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:22244400-22247600	Weak transcription	Right Atrium	heart
49	chr7:22244400-22248400	Weak transcription	Fetal Thymus	thymus
50	chr7:22244600-22247000	Weak transcription	NHEK	skin

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