Variant report

Variant	rs17146377
Chromosome Location	chr7:22235825-22235826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22180583..22182622-chr7:22234648..22237442,2	MCF-7	breast:
2	chr7:22226022..22228135-chr7:22235562..22238353,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13236178	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419756	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17146355	1.00[CEU][hapmap];0.91[MEX][hapmap];0.91[AMR][1000 genomes]
rs71526390	0.84[AMR][1000 genomes]
rs7385240	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
3	chr7:22223200-22242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
5	chr7:22225800-22246800	Strong transcription	Dnd41	blood
6	chr7:22227000-22236800	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr7:22227400-22245600	Strong transcription	HepG2	liver
8	chr7:22230400-22243000	Weak transcription	Gastric	stomach
9	chr7:22233400-22247600	Weak transcription	Psoas Muscle	Psoas
10	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:22233600-22236600	Weak transcription	Fetal Intestine Small	intestine
12	chr7:22233600-22236600	Weak transcription	Lung	lung
13	chr7:22233600-22238400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:22233600-22238400	Weak transcription	Spleen	Spleen
15	chr7:22233600-22238800	Weak transcription	Pancreas	Pancrea
16	chr7:22233600-22240600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:22233600-22240800	Weak transcription	Right Atrium	heart
18	chr7:22233600-22241400	Weak transcription	Aorta	Aorta
19	chr7:22233600-22242800	Weak transcription	Thymus	Thymus
20	chr7:22233600-22247600	Weak transcription	Right Ventricle	heart
21	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
22	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:22233800-22236400	Enhancers	Brain Substantia Nigra	brain
24	chr7:22233800-22237200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:22233800-22239400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:22233800-22240600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr7:22233800-22242600	Weak transcription	Liver	Liver
28	chr7:22233800-22244000	Weak transcription	NHEK	skin
29	chr7:22233800-22247400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:22233800-22247400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:22234200-22240600	Strong transcription	Fetal Thymus	thymus
32	chr7:22234600-22236200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr7:22234600-22236800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:22234800-22236000	Enhancers	Brain Anterior Caudate	brain
35	chr7:22234800-22236000	Enhancers	Brain Hippocampus Middle	brain
36	chr7:22234800-22236800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:22234800-22238400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:22235000-22239600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:22235000-22240600	Weak transcription	Brain Angular Gyrus	brain
40	chr7:22235000-22240600	Weak transcription	Fetal Kidney	kidney
41	chr7:22235400-22236800	Strong transcription	Primary B cells from cord blood	blood
42	chr7:22235400-22240600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:22235400-22240600	Weak transcription	Fetal Intestine Large	intestine
44	chr7:22235600-22236200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:22235600-22239400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links