Variant report

Variant	rs1323658
Chromosome Location	chr10:6094354-6094355
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6017579..6019952-chr10:6092243..6094639,2	MCF-7	breast:
2	chr10:6092360..6095172-chr10:6096702..6099440,2	K562	blood:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62626314	0.88[EUR][1000 genomes]
rs6602392	0.90[CHB][hapmap]
rs791587	0.90[CHB][hapmap]
rs791589	0.90[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6093200-6094400	Weak transcription	Small Intestine	intestine
2	chr10:6093400-6094400	Enhancers	Primary T cells from cord blood	blood
3	chr10:6093400-6094400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:6093400-6094400	Weak transcription	Brain Angular Gyrus	brain
5	chr10:6093400-6094400	Weak transcription	Placenta	Placenta
6	chr10:6093400-6094400	Weak transcription	Left Ventricle	heart
7	chr10:6093400-6094400	Weak transcription	Lung	lung
8	chr10:6093400-6094800	Weak transcription	Colonic Mucosa	Colon
9	chr10:6093400-6094800	Weak transcription	Right Atrium	heart
10	chr10:6093400-6094800	Weak transcription	Stomach Mucosa	stomach
11	chr10:6093400-6095000	Weak transcription	Fetal Intestine Small	intestine
12	chr10:6093400-6095400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:6093400-6095800	Enhancers	Duodenum Mucosa	Duodenum
14	chr10:6093400-6095800	Weak transcription	Pancreas	Pancrea
15	chr10:6093400-6096000	Weak transcription	Hela-S3	cervix
16	chr10:6093400-6096200	Enhancers	Primary hematopoietic stem cells	blood
17	chr10:6093400-6096200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr10:6093400-6096400	Enhancers	Fetal Thymus	thymus
19	chr10:6093400-6096800	Enhancers	Adipose Nuclei	Adipose
20	chr10:6093400-6097200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:6093400-6101000	Weak transcription	Psoas Muscle	Psoas
22	chr10:6093400-6102800	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:6093600-6095800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr10:6093600-6095800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:6093800-6094800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:6093800-6095400	Flanking Active TSS	GM12878-XiMat	blood
27	chr10:6093800-6104200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
28	chr10:6094000-6094400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr10:6094000-6094400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:6094000-6094400	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:6094000-6094600	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr10:6094000-6094800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr10:6094000-6094800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr10:6094000-6095000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr10:6094000-6095000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:6094000-6095200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr10:6094000-6095200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:6094000-6095200	Enhancers	Brain Anterior Caudate	brain
39	chr10:6094000-6095200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr10:6094000-6095200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:6094000-6095200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:6094000-6095800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:6094000-6095800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr10:6094000-6096000	Enhancers	HMEC	breast
45	chr10:6094000-6097400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:6094200-6094400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
47	chr10:6094200-6094400	Enhancers	Colon Smooth Muscle	Colon
48	chr10:6094200-6094400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr10:6094200-6094400	Enhancers	K562	blood
50	chr10:6094200-6094600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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