Variant report

Variant	rs791589
Chromosome Location	chr10:6089571-6089572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6068386..6070210-chr10:6087289..6089702,2	K562	blood:
2	chr10:6088691..6090332-chr10:6090960..6092832,2	K562	blood:
3	chr10:6087719..6090025-chr10:6099412..6101366,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1323658	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4749926	0.81[CHB][hapmap]
rs7072398	0.81[CHB][hapmap]
rs791588	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs791589	PITRM1	cis	parietal	SCAN
rs791589	RGN	trans	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6085600-6092000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr10:6085800-6092400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:6086000-6093000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
4	chr10:6086400-6089600	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:6086400-6090800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:6087200-6091400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:6087600-6092000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:6087800-6092200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:6087800-6092600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:6088000-6089800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:6088000-6091800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:6088200-6090600	Weak transcription	Primary B cells from cord blood	blood
13	chr10:6088200-6091800	Weak transcription	Spleen	Spleen
14	chr10:6088200-6092200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:6088800-6090000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:6088800-6090400	Weak transcription	GM12878-XiMat	blood
17	chr10:6088800-6090800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
18	chr10:6088800-6091200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:6088800-6091400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:6089000-6090200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:6089400-6089800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:6089400-6089800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:6089400-6090200	Weak transcription	Fetal Thymus	thymus
24	chr10:6089400-6091400	Weak transcription	Primary T cells from cord blood	blood
25	chr10:6089400-6091400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:6089400-6091800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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