Variant report

Variant	rs4749926
Chromosome Location	chr10:6085312-6085313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10905656	0.92[CEU][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs11256457	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025345	0.90[CHB][hapmap]
rs6602392	0.81[CHB][hapmap]
rs7072398	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs791587	0.81[CHB][hapmap]
rs791588	0.87[ASN][1000 genomes]
rs791589	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6080200-6086400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:6080600-6085400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:6080600-6086000	Weak transcription	Fetal Thymus	thymus
4	chr10:6080600-6086000	Weak transcription	Thymus	Thymus
5	chr10:6080600-6086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:6081800-6085400	Weak transcription	Primary T cells from cord blood	blood
7	chr10:6081800-6085400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:6082000-6085600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:6082000-6086000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:6082000-6086000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:6082200-6086000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:6082200-6086000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:6083000-6085800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:6083400-6085600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:6083600-6086000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:6084600-6085400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:6084800-6086200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:6085000-6085400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:6085200-6086400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links