Variant report

Variant	rs13237186
Chromosome Location	chr7:83859621-83859622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1015628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215878	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236509	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256470	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262040	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272145	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707631	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707640	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222313	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13230582	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231596	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234176	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521462	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34034034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34808266	0.84[EUR][1000 genomes]
rs35006905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35377558	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35929449	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58804537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558721	0.84[EUR][1000 genomes]
rs71558722	0.84[EUR][1000 genomes]
rs71558723	0.81[EUR][1000 genomes]
rs73384867	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83854600-83860000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:83854800-83860000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:83856600-83859800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:83857600-83859800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:83857600-83874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:83858600-83860000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:83859400-83860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:83859600-83860000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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