Variant report

Variant	rs35929449
Chromosome Location	chr7:83882100-83882101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83855829..83858615-chr7:83880925..83883506,2	K562	blood:
2	chr7:83875965..83878542-chr7:83880011..83883471,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1015628	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215878	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223946	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262040	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272145	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979192	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979193	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707631	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707640	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13230582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231596	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234176	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234555	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237186	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244575	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158747	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521462	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34034034	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34808266	0.89[EUR][1000 genomes]
rs35006905	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35377558	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58804537	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558721	0.89[EUR][1000 genomes]
rs71558722	0.89[EUR][1000 genomes]
rs71558723	0.86[EUR][1000 genomes]
rs73384867	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv5818	chr7:83874968-83919804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83875800-83893800	Weak transcription	NHDF-Ad	bronchial
2	chr7:83878400-83884600	Weak transcription	Fetal Lung	lung
3	chr7:83878600-83885400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:83880200-83886000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:83880200-83892200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:83881000-83885800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:83881200-83886000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:83881600-83884400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:83881600-83886800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:83881600-83886800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:83881800-83884400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:83881800-83887000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:83881800-83894000	Weak transcription	NH-A	brain
14	chr7:83882000-83885400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:83882000-83886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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