Variant report

Variant	rs13237374
Chromosome Location	chr7:98706012-98706013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98701918..98704842-chr7:98705814..98708479,3	MCF-7	breast:
2	chr7:98657665..98659351-chr7:98705792..98707961,2	MCF-7	breast:
3	chr7:98705746..98709744-chr7:98739368..98742285,3	MCF-7	breast:
4	chr7:98704874..98707226-chr7:98739662..98742113,2	K562	blood:
5	chr7:98696493..98698326-chr7:98705563..98708307,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231389	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1115930	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11770956	1.00[EUR][1000 genomes]
rs12534243	0.83[EUR][1000 genomes]
rs12705023	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2176021	0.95[AFR][1000 genomes]
rs28760348	0.83[EUR][1000 genomes]
rs4292617	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4510778	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4604368	0.83[EUR][1000 genomes]
rs6956482	0.83[EUR][1000 genomes]
rs6975671	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98684400-98706600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr7:98692600-98706800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:98694000-98706400	Weak transcription	Fetal Lung	lung
4	chr7:98694000-98706800	Weak transcription	Right Atrium	heart
5	chr7:98694200-98706600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:98697000-98706400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:98697400-98706400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:98697400-98709200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:98697400-98717600	Weak transcription	Dnd41	blood
10	chr7:98698000-98706400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:98698200-98709400	Weak transcription	Fetal Intestine Small	intestine
12	chr7:98699200-98706600	Enhancers	NHDF-Ad	bronchial
13	chr7:98699400-98706800	Weak transcription	Fetal Stomach	stomach
14	chr7:98700600-98706400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:98700800-98706800	Weak transcription	Esophagus	oesophagus
16	chr7:98701000-98706800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:98701200-98706400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:98701200-98707000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:98701400-98706800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:98701400-98706800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:98701400-98707000	Weak transcription	K562	blood
22	chr7:98701600-98706400	Weak transcription	Hela-S3	cervix
23	chr7:98702000-98706400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:98702600-98706400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:98702600-98706600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:98702600-98706600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:98702600-98706600	Weak transcription	Fetal Brain Male	brain
28	chr7:98702600-98706800	Weak transcription	Fetal Brain Female	brain
29	chr7:98702600-98710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:98702800-98706400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:98702800-98706600	Weak transcription	Primary B cells from cord blood	blood
32	chr7:98702800-98708000	Weak transcription	Fetal Heart	heart
33	chr7:98703000-98706400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr7:98703200-98707400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr7:98703200-98707600	Enhancers	Adipose Nuclei	Adipose
36	chr7:98703200-98708400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:98703200-98710200	Enhancers	HMEC	breast
38	chr7:98703400-98706600	Enhancers	Muscle Satellite Cultured Cells	--
39	chr7:98703400-98706600	Enhancers	HepG2	liver
40	chr7:98703400-98706600	Enhancers	NHLF	lung
41	chr7:98703400-98706800	Enhancers	Brain Cingulate Gyrus	brain
42	chr7:98703400-98707400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr7:98703400-98711200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr7:98703600-98706800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:98703600-98707800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr7:98703800-98707200	Enhancers	Stomach Mucosa	stomach
47	chr7:98703800-98708200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:98703800-98711000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:98704000-98707800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:98704000-98708200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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