Variant report

Variant	rs28760348
Chromosome Location	chr7:98698046-98698047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98692455..98694534-chr7:98696976..98699022,2	K562	blood:
2	chr7:98689157..98692121-chr7:98696694..98698453,3	K562	blood:
3	chr7:98694639..98696365-chr7:98696830..98699641,3	K562	blood:
4	chr7:98696493..98698326-chr7:98705563..98708307,2	MCF-7	breast:
5	chr7:98685529..98691307-chr7:98694168..98698506,8	K562	blood:
6	chr7:98692455..98696355-chr7:98696976..98702549,8	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10231389	1.00[EUR][1000 genomes]
rs1115930	1.00[EUR][1000 genomes]
rs11770956	0.83[EUR][1000 genomes]
rs12705023	1.00[EUR][1000 genomes]
rs13237374	0.83[EUR][1000 genomes]
rs4292617	1.00[EUR][1000 genomes]
rs4510778	1.00[EUR][1000 genomes]
rs4604368	1.00[EUR][1000 genomes]
rs6956482	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6975671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98676600-98702200	Weak transcription	Brain Germinal Matrix	brain
2	chr7:98677000-98700000	Weak transcription	HSMM	muscle
3	chr7:98677200-98705400	Weak transcription	Fetal Thymus	thymus
4	chr7:98678800-98700000	Weak transcription	HUVEC	blood vessel
5	chr7:98681800-98700600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:98684400-98706600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:98690600-98700400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:98692600-98701000	Weak transcription	Fetal Brain Male	brain
9	chr7:98692600-98706800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:98693800-98700400	Weak transcription	Esophagus	oesophagus
11	chr7:98693800-98705800	Weak transcription	Lung	lung
12	chr7:98694000-98702000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:98694000-98705800	Weak transcription	Left Ventricle	heart
14	chr7:98694000-98705800	Weak transcription	Right Ventricle	heart
15	chr7:98694000-98706400	Weak transcription	Fetal Lung	lung
16	chr7:98694000-98706800	Weak transcription	Right Atrium	heart
17	chr7:98694200-98699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:98694200-98703400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:98694200-98706600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:98694600-98700800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:98695000-98698400	Enhancers	NHDF-Ad	bronchial
22	chr7:98695200-98705200	Weak transcription	Gastric	stomach
23	chr7:98695400-98700400	Weak transcription	K562	blood
24	chr7:98696600-98703400	Weak transcription	Aorta	Aorta
25	chr7:98696800-98698200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:98696800-98700400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:98696800-98700600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:98697000-98698200	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr7:98697000-98698200	Enhancers	Pancreas	Pancrea
30	chr7:98697000-98706400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr7:98697200-98698200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr7:98697200-98699400	Strong transcription	Fetal Stomach	stomach
33	chr7:98697200-98700000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:98697200-98700400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:98697200-98705000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:98697400-98698600	Genic enhancers	A549	lung
37	chr7:98697400-98698800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:98697400-98698800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:98697400-98698800	Weak transcription	Placenta	Placenta
40	chr7:98697400-98699400	Weak transcription	NHLF	lung
41	chr7:98697400-98700400	Weak transcription	Psoas Muscle	Psoas
42	chr7:98697400-98700400	Weak transcription	Hela-S3	cervix
43	chr7:98697400-98700400	Weak transcription	NH-A	brain
44	chr7:98697400-98700600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:98697400-98700800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:98697400-98702000	Weak transcription	Brain Substantia Nigra	brain
47	chr7:98697400-98702800	Weak transcription	Brain Angular Gyrus	brain
48	chr7:98697400-98703600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:98697400-98703600	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:98697400-98705200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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