Variant report

Variant	rs13237608
Chromosome Location	chr7:100142890-100142891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100024941..100026600-chr7:100141145..100143393,2	K562	blood:
2	chr7:100142201..100145553-chr7:100159344..100161288,4	K562	blood:
3	chr7:100140983..100146932-chr7:100182357..100186194,10	MCF-7	breast:
4	chr7:100141248..100143599-chr7:100200875..100203327,2	K562	blood:
5	chr7:100142335..100144694-chr7:100146748..100149510,3	K562	blood:
6	chr7:100025997..100028505-chr7:100141449..100143721,2	MCF-7	breast:
7	chr7:100061179..100064174-chr7:100142054..100143919,2	K562	blood:
8	chr7:100142841..100146326-chr7:100160207..100163065,3	MCF-7	breast:
9	chr7:100080589..100081406-chr7:100142645..100143538,2	MCF-7	breast:
10	chr7:100129087..100132540-chr7:100139779..100143432,5	K562	blood:
11	chr7:100074335..100078343-chr7:100142686..100146158,4	K562	blood:
12	chr7:100026388..100028395-chr7:100140430..100143246,2	MCF-7	breast:
13	chr7:100141487..100144211-chr7:100154594..100158320,3	MCF-7	breast:
14	chr7:100117244..100119280-chr7:100140483..100142893,2	K562	blood:
15	chr7:100136291..100139067-chr7:100140246..100145508,4	MCF-7	breast:
16	chr7:100098416..100100583-chr7:100140917..100143201,2	MCF-7	breast:
17	chr7:100024941..100027622-chr7:100141781..100145026,4	K562	blood:
18	chr7:100080527..100083060-chr7:100141951..100145813,4	MCF-7	breast:
19	chr7:100129499..100134064-chr7:100138871..100143432,7	K562	blood:
20	chr7:100141735..100143588-chr7:100448245..100450258,2	K562	blood:
21	chr7:100030016..100034371-chr7:100142404..100146654,4	K562	blood:
22	chr7:100032634..100034621-chr7:100141142..100143252,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000240211	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000106333	Chromatin interaction
ENSG00000224729	Chromatin interaction
ENSG00000166925	Chromatin interaction
ENSG00000266372	Chromatin interaction
ENSG00000166924	Chromatin interaction
ENSG00000106351	Chromatin interaction
ENSG00000185955	Chromatin interaction
ENSG00000077454	Chromatin interaction
ENSG00000241357	Chromatin interaction
ENSG00000160813	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000236305	Chromatin interaction
ENSG00000106336	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10251602	1.00[LWK][hapmap]
rs12673102	1.00[LWK][hapmap]
rs221775	1.00[LWK][hapmap]
rs28446670	1.00[LWK][hapmap]
rs34437892	1.00[LWK][hapmap]
rs4352765	1.00[LWK][hapmap]
rs4999572	1.00[LWK][hapmap]
rs7801492	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv888776	chr7:100014711-100198386	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
4	nsv888777	chr7:100014711-100221867	Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
5	nsv888778	chr7:100014711-100236593	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
6	nsv888779	chr7:100014711-100313420	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
7	nsv888780	chr7:100032665-100198386	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
8	nsv888782	chr7:100064719-100236593	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
9	nsv888785	chr7:100141861-100313420	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100137800-100143200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:100137800-100143400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:100137800-100144000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:100137800-100146600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:100138000-100143000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:100138000-100145400	Weak transcription	Primary B cells from cord blood	blood
7	chr7:100138000-100145400	Weak transcription	Fetal Brain Male	brain
8	chr7:100138000-100145400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:100138200-100143000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:100138200-100143400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:100138200-100143600	Weak transcription	Brain Germinal Matrix	brain
12	chr7:100138200-100146400	Weak transcription	Fetal Brain Female	brain
13	chr7:100138400-100146400	Weak transcription	Dnd41	blood
14	chr7:100139200-100144600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:100139800-100143000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr7:100140000-100144400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:100140000-100145800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr7:100140000-100148000	Enhancers	Primary B cells from peripheral blood	blood
19	chr7:100140400-100144000	Enhancers	K562	blood
20	chr7:100140400-100144600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:100140400-100145400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr7:100140400-100146200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:100140600-100143000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:100140600-100143600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:100140600-100143600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:100140600-100143800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr7:100140600-100144600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:100140600-100144800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:100140600-100145400	Weak transcription	Gastric	stomach
30	chr7:100140800-100145000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:100141000-100144000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:100141000-100145800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr7:100141000-100145800	Flanking Active TSS	GM12878-XiMat	blood
34	chr7:100141000-100146000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr7:100141000-100146600	Enhancers	Brain Cingulate Gyrus	brain
36	chr7:100141200-100143000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr7:100141200-100143000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:100141200-100144200	Enhancers	Brain Hippocampus Middle	brain
39	chr7:100141200-100146200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:100141200-100146600	Enhancers	Small Intestine	intestine
41	chr7:100141400-100143200	Enhancers	Colonic Mucosa	Colon
42	chr7:100141400-100144200	Enhancers	Stomach Smooth Muscle	stomach
43	chr7:100141400-100144600	Enhancers	Brain Angular Gyrus	brain
44	chr7:100141600-100143000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:100141600-100144200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:100141600-100144600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr7:100141600-100145400	Flanking Active TSS	A549	lung
48	chr7:100141600-100146200	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr7:100141600-100146400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr7:100141600-100146600	Enhancers	Fetal Heart	heart

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