Variant report

Variant	rs7801492
Chromosome Location	chr7:100192117-100192118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100188163..100192877-chr7:100198518..100203152,5	K562	blood:
2	chr7:100190678..100192330-chr7:100197367..100200057,2	MCF-7	breast:
3	chr7:100191377..100195443-chr7:100198658..100203680,7	K562	blood:
4	chr7:100191442..100194246-chr7:100208533..100210094,2	K562	blood:
5	chr7:100191640..100194226-chr7:100194621..100197641,3	K562	blood:
6	chr7:100192016..100194467-chr7:100330955..100333503,2	K562	blood:
7	chr7:100188221..100193306-chr7:100270326..100273526,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146839	Chromatin interaction
ENSG00000106330	Chromatin interaction
ENSG00000224729	Chromatin interaction
ENSG00000106333	Chromatin interaction
ENSG00000172354	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10229308	1.00[CHB][hapmap]
rs10251602	1.00[LWK][hapmap]
rs12539083	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs12673102	1.00[LWK][hapmap]
rs13237608	1.00[LWK][hapmap]
rs221775	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs2272573	1.00[MEX][hapmap]
rs2686810	1.00[MEX][hapmap]
rs34437892	1.00[LWK][hapmap]
rs4352765	1.00[LWK][hapmap]
rs4999572	1.00[LWK][hapmap]
rs6974537	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
2	nsv888776	chr7:100014711-100198386	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
3	nsv888777	chr7:100014711-100221867	Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
4	nsv888778	chr7:100014711-100236593	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
5	nsv888779	chr7:100014711-100313420	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
6	nsv888780	chr7:100032665-100198386	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv888782	chr7:100064719-100236593	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
8	nsv888785	chr7:100141861-100313420	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
9	nsv888786	chr7:100159567-100313420	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
10	nsv831072	chr7:100162503-100362835	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
11	nsv5868	chr7:100169998-100214646	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100185000-100197600	Weak transcription	Ovary	ovary
2	chr7:100188000-100194000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:100188000-100198800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:100188200-100194000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:100188400-100197800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:100188600-100194800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:100188600-100197600	Weak transcription	Placenta	Placenta
8	chr7:100188600-100199000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:100188600-100199800	Weak transcription	Right Atrium	heart
10	chr7:100188600-100201400	Weak transcription	Spleen	Spleen
11	chr7:100189200-100197000	Strong transcription	Fetal Stomach	stomach
12	chr7:100189200-100197600	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:100189200-100199000	Weak transcription	Fetal Lung	lung
14	chr7:100190600-100193400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:100190800-100197200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:100191600-100193400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:100192000-100192200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:100192000-100192200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:100192000-100192200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:100192000-100192200	Enhancers	Esophagus	oesophagus
21	chr7:100192000-100194400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:100192000-100194800	Strong transcription	H9 Cell Line	embryonic stem cell

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