Variant report

Variant	rs13239638
Chromosome Location	chr7:18894855-18894856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11761877	1.00[YRI][hapmap]
rs12530952	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17350341	1.00[YRI][hapmap]
rs17350397	1.00[YRI][hapmap]
rs17350431	1.00[YRI][hapmap]
rs2024022	1.00[YRI][hapmap]
rs2028015	0.83[MKK][hapmap]
rs7811991	0.95[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13239638	HDAC9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18888200-18895000	Weak transcription	Aorta	Aorta
2	chr7:18889600-18895200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:18890000-18895000	Weak transcription	Osteobl	bone
4	chr7:18890200-18895600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:18894600-18896200	Enhancers	NHDF-Ad	bronchial
6	chr7:18894600-18896600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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